New paper on Whole-Genome-Sequencing of Australian Tursiops aduncus
Dear MarMammers, We are pleased to disseminate the following open access publication in Molecular Ecology: Marfurt SM, Tran Lu Y A, Dauphin B, Bizzozzero MR, Hatakeyama M, Chabanne DBH, Allen SJ, Smith F, Parra GJ, Krützen M (2026). Whole-genome-sequencing reveals demographic history and patterns of parallel adaptive evolution in Indo-Pacific bottlenose dolphins (Tursiops aduncus) across coastal Australian seascapes. Molecular Ecology 35: e70383. Abstract: Understanding how demographic dynamics interact with environmental heterogeneity is central to explaining patterns of genomic variation in the marine realm. Indo-Pacific bottlenose dolphins (Tursiops aduncus) occur along most of the Australian coastline, from tropical to temperate waters, encompassing pronounced differences in temperature, salinity, chlorophyll-a concentration and ocean currents. Using whole-genome sequencing of individuals covering this range, we examined population genetic structure and adaptive divergence at a continental scale. Genome-wide variation mirrored geographic patterns, consistent with a common origin in the north, followed by two independent stepping-stone-like colonization patterns along the eastern and the western coastlines from north to south. In contrast, putatively adaptive loci clustered individuals by tropical waters regardless of geographic distance, indicating strong parallel adaptation in tropical habitats. Candidate loci were enriched for functions related to metabolism and ion transport, with some mapping to genes with regulatory functions. Additional signals potentially suggest involvement of neuronal pathways, consistent with adaptation in a highly social and cognitively advanced marine mammal. Our results highlight the complex interplay between demographic history and selection and suggest tropical–temperate, potentially ecotype-like differentiation across Australian waters. In the face of accelerating climate change, recognizing such adaptive structuring is critical for preserving evolutionary potential. Incorporating adaptive genomic information into conservation planning, alongside neutral genetic data, will be essential for anticipating population responses to future environmental change and for identifying biologically meaningful conservation units. You can access the article here https://onlinelibrary.wiley.com/doi/10.1111/mec.70383 (if you’re prepared to verify that you’re human), or drop Svenja a line to discuss: svenja.marfurt@iea.uzh.ch<mailto:svenja.marfurt@iea.uzh.ch>. This research is the culmination of wide-ranging sampling efforts by many contributors, followed by advanced and rigorous analytical efforts associated with several Ph.D. projects. Other recent papers from the lab include: Bizzozzero MR, Marfurt SM, Altermatt F, Willems EP, Damm-Reiser A, Allen SJ, Walser JC, Krützen M 2025. Integrating environmental DNA metabarcoding and remote sensing reveals known and novel fish diversity hotspots in a World Heritage Area. Diversity and Distributions 31: e70074. Marfurt S, Chabanne DBH, Wittwer S, Bizzozzero MR, Allen SJ, Gerber L, Nicholson K, Krútzen M 2024. Demographic history and adaptive evolution of Indo-Pacific bottlenose dolphins (Tursiops aduncus) in Western Australia. Molecular Ecology 33: e17555. All the best, Simon and Svenja on behalf of all co-authors.
Hi again MarMammers, We are pleased to share the following open access publication in PNAS: Bouchard A, Allen SJ, Sørensen PM, Krützen M, Marfurt SM, Connor RC, King SL (2026) Female dolphins use individual vocal labels to track coercive males. Proc Natl Acad Sci USA 123: e2531602123. Abstract: Animals rely on identity signaling to navigate social relationships, assess potential mates, and avoid costly interactions. While species-and group-level recognition signals can provide fitness advantages by preventing inbreeding depression and hybridization, our understanding of the role that individual identity signals can play in mate choice is notably lacking. In species with coercive mating systems, females must carefully evaluate male behavior to minimize risks while also maximizing reproductive success, yet the mechanisms that enable them to monitor and respond to male behavior remain poorly understood. Male Indo-Pacific bottlenose dolphins form multilevel alliances to compete for access to reproductive females, with important consequences for how females negotiate their relationships with males. In this study, we investigated how females assess males by conducting 34 sound playbacks to 17 females and using drone-mounted video to analyze their behavioral responses to individual male identity signals. We combined these experiments with long term behavioral data to examine how female reproductive state, sociability, and interaction history shaped their responses. Females who were reproductively available showed a significantly stronger aversive response to the identity signals of males who coerced females at higher rates, suggesting that females track male behavior across time and use individual vocal labels to guide reproductive decision-making based on their experience of individual male behavior. This capacity suggests that females integrate social knowledge about individual males to strategically manage intersexual relationships and mate choice. You can access the article here https://www.pnas.org/doi/10.1073/pnas.2531602123, or drop the corresponding authors a line: alicebouchard6@gmail.com and stephanie.king@bristol.ac.uk. Other recent papers from the lab include: Hill-Cousins S, Chereskin E, Allen SJ, Connor RC, Krützen M, Papageorgiou D, King SL 2025. Allied male dolphins use synchronous displays to strengthen social bonds in a cooperative context. Mov Ecol 13: 84. Sørensen PM, Connor RC, Allen SJ, Krützen M, Lebrec U, Jensen FH, King SL 2024. Communication range predicts dolphin alliance size in a cooperative mating system. Curr Biol 34: 4774-4780. All the best, Simon, Alice and Stephanie on behalf of all co-authors.
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Simon Allen